Supporting Discovery - Visualizing proteins in mouse, pig & human colonic enteric nervous system


Validated with different tissue preparations and protocols

Problem

Millions of people display colonic dysfunction. For instance, irritable bowel syndrome (IBS) and functional constipation affect 1 out of 6 Americans, resulting in decreased quality of life, and a substantial economic burden. Yet, effective therapies are lacking. The enteric nervous system (ENS) plays a key role in regulating colonic functions. The ENS communicates with the central nervous system, intrinsic neuronal circuits, circulating hormones and a wide range of cells including the interstitial cells of Cajal (ICCs) which modulate muscle activity and neuromuscular transmission. There is also a large population of enteric glia cells (EGCs) and immune cells that modulate colonic barrier function and inflammation. The integration of all of these systems is essential for colonic homeostasis, however, the current understanding of them is far from being complete, particularly in humans. While neuromodulatory therapies have shown promise, further investigation is needed to identify the neuroanatomy of cellular targets, and to optimize parameters for effective neuromodulation. This entails a better understanding of the fundamental organization of the peripheral nervous circuits that innervate the colon in humans and relevant experimental models.

Solution

Immunohistochemical labeling is a well-established approach to localize a wide variety of molecules in cells, with high spatial resolution. As such, it is a powerful means to dissect neural pathways at the cellular level. The SPARC team at the University of California in Los Angeles, United States, Flinders University in Adelaide, Australia, Technical University in Munich, and University Veterinary Medicine in Hannover, Germany adapted and developed cutting-edge approaches to obtain a level of detail on neural circuits in the human, pig and mouse colonic tissues that has never been achieved before. Methods included multi-layer immunohistochemistry, tissue clearing (CLARITY), high resolution confocal microscopy, light sheet microscopy and 3D imaging. The first step in developing these approaches was to characterize the suitability of antibodies for labeling structures adequately in different colonic preparations of multiple species (mouse, pig and human) as detailed in SPARC Antibody Labeling Database: Colonic enteric nervous system.

Impact

The comprehensive list of antibodies tested in various preparations of the human colon will provide valuable information to future researchers in choosing antisera to investigate human tissue in health and diseases. A few examples using these approaches are highlighted.

Figure 1 shows three dimensional (3D) features of intrinsic cholinergic innervation in the human sigmoid submucosal plexus (left panel) and myenteric plexus (right panel) for the first time in videos generated from CLARITY-cleared samples combined with immunofluorescence using a novel mouse anti-human peripheral ChAT (hpChAT).

Figure 2 illustrates double immunostaining with the combination of vesicular acetylcholine transporter (VAChT) antibody to label extrinsic/intrinsic (red arrows) and human peripheral choline acetyltransferase (hpChAT) antibody to label selectively intrinsic innervation (green arrows) allowing to simultaneous visualize the extrinsic and intrinsic cholinergic innervation in the human inner submucosal plexus (A) and outer submucosal plexus (B) of human sigmoid colon.

Figs. VAChT and hpChAT in SMP of human sigmoid colon

Figure 3 displays other antibodies tested after CLARITY with multiple labeling of the myenteric neurons in the pig proximal colon (upper figure) triple-labeled by pChAT (green), neuronal nitric oxide synthase (nNOS, red) and pan neuronal marker, Hu C/D, blue) and mouse (lower figure) double-labeled by pChAT (red) and nNOS (green).

Tache fig 3

Tache fig 4

Multi-layer immunohistochemistry

The novel multi-layer immunohistochemistry approach produces a comprehensive immunohistochemical coding of human colonic myenteric plexusThis novel approach uses analysis of conventional immunofluorescence staining, followed by an elution step in which the antisera are removed from the preparation. A second layer of primary and secondary antisera can then be applied, followed by analysis and elution. With appropriate controls, up to 8 layers of antisera (localizing 24 markers) can be applied to the same population of cells.

Tache fig 5.

These new developments open new venues to assess the structure-function relationships, and pathological alterations in colonic diseases.

AUTHOR
Yvette Taché , PhD

PUBLISHED DATE
February 21, 2023

TEAM MEMBERS

University of California in Los Angeles, United States

Catia Sternini ORCID ID: 0000-0003-0492-1993

Yvette Taché ORCID ID: 0000-0002-1044-5279

Lixin Wang ORCID ID: 0000-0001-8140-6325

Pu-Qing Yuan ORCID ID: 0000-0002-0067-510X

Flinders University, Adelaide, Australia

Simon JH. Brookes ORCID ID: 0000-0001-5635-0876

Technical University Munich, Germany

Michael Schemann ORCID ID: 0000-0003-1007-9843

University of Veterinary Medicine Hannover, Germany

Gemma Mazzuoli-Weber ORCID ID: 0000-0001-7803-3556


SUPPORTING INFORMATION

[1] SPARC Antibody Labeling Database: Colonic enteric nervous system

[2] Humenick A, Chen BN, Wattchow DA, Zagorodnyuk VP, Dinning PG, Spencer NJ, Costa M, Brookes SJH. Characterization of putative interneurons in the myenteric plexus of human colon. Neurogastroenterol Motil. 2021 Jan;33:e13964. doi.org/10.1111/nmo.13964. PMID: 32839997

[3] Mazzoni M, Caremoli F, Cabanillas L, de Los Santos J, Million M, Larauche M, Clavenzani P, De Giorgio R, Sternini C. Quantitative analysis of enteric neurons containing choline acetyltransferase and nitric oxide synthase immunoreactivities in the submucosal and myenteric plexuses of the porcine colon. Cell Tissue Res. 2021 Feb;383(2):645-654.doi.org/10.1007/s00441-020-03286-7. PMID: 32965550

[4] Yuan PQ, Bellier JP, Li T, Kwaan MR, Kimura H, Taché Y. Intrinsic cholinergic innervation in the human sigmoid colon revealed using CLARITY, three-dimensional (3D) imaging, and a novel anti-human peripheral choline acetyltransferase (hpChAT) antiserum. Neurogastroenterol Motil. 2021 Apr;33:e14030. dx.doi.org/10.1111/nmo.14030. PMID: 3317429

[5] Parker DR, Wiklendt L, Humenick A, Chen BN, Sia TC, Wattchow DA, Dinning PG, Brookes SJH. Sympathetic Pathways Target Cholinergic Neurons in the Human Colonic Myenteric Plexus. Front Neurosci. 2022 Mar 17;16:863662. doi.org/10.3389/fnins.2022.863662. eCollection 2022. PMID: 35368277

[6] Michel K, Kuch B, Dengler S, Demir IE, Zeller F, Schemann M. How big is the little brain in the gut? Neuronal numbers in the enteric nervous system of mice, Guinea pig, and human. Neurogastroenterol Motil. 2022 Dec;34(12):e14440.doi.org/10.1111/nmo.14440. PMID: 35929768

[7] Grant number NIH SPARC 1OT2OD024899-01H

[8] Algorithms N/A

[9] Protocol links

Yuan, P.-Q., Taché Y. CLARITYAnd3DImagingOfColonicENSintheMouseAndPig_1_2019-Pig_Protocol. protocols.io dx.doi.org/10.17504/protocols.io.4r9gv96

Tache_Yuan_CLARITYAnd3DImagingOfColonicENSintheMouseAndPig_1_2019-Mouse_Protocol (Annotation Copy) protocols.io dx.doi.org/10.17504/protocols.io.4sagwa

Bao Nan CHEN, Adam Humenick, Simon Brookes 2022. Immunohistochemical labelling of the innervation of dissected human colon wholemounts. protocols.io https://dx.doi.org/10.17504/protocols.io.n92ldpb47l5b/v1

Maurizio Mazzoni, Filippo Caremoli, Luis Cabanillas, Janira de los Santos, Mulugeta Million, Muriel Larauche, Paolo Clavenzani, Roberto De Giorgio, Catia Sternini 2021. Quantitative analysis of enteric neurons containing choline acetyltransferase and nitric oxide synthase immunoreactivities in the submucosal and myenteric plexuses of the porcine colon. protocols.io https://dx.doi.org/10.17504/protocols.io.bfqmjmu6

Gemma Mazzuoli-Weber, Michael Schemann, Kristin Elfers, Birgit Kuch, Susanne Hoppe 2022. Immunohistochemistry of porcine enteric neurons. protocols.io https://dx.doi.org/10.17504/protocols.io.b4qrqvv6

Lixin Wang, Collin Challis, Honghui Liang, Songlin Li, Charless Fowlkes, Aidan Sullivan, Kumar SR, Yvette Taché 2020. Multicolor adeno-associate virus labeling and 3D digital tracing of enteric plexus in mouse proximal colon. protocols.io https://dx.doi.org/10.17504/protocols.io.bqavmse6

Tao Li, Pu-Qing Yuan, Yvette Taché 2020. A single cell RNA sequencing protocol for the pig colon. protocols.io https://dx.doi.org/10.17504/protocols.io.bgdmjs46

Lixin Wang, Pu-Qing Yuan, Honghui Liang, Yvette Taché 2021. Immunofluorescent methods for antibody test in mouse colon. protocols.io https://dx.doi.org/10.17504/protocols.io.bqi2muge


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ASSOCIATED DATASETS

Antibodies tested in the colon – Human
List of antibodies that were tested in the human colon.
Antibodies tested in the colon - Pig
List of antibodies that were tested in the pig colon. Information on source, species, dilution, and whether the test was performed on whole colonic wall with CLARITY, or whole mount preparations of submucosal and myenteric plexus.
Antibodies tested in the colon – Mouse
List of antibodies that were tested in the mouse colon. Information on source, species, dilution, and whether the test was performed on whole colonic wall with CLARITY, or whole mount preparations of submucusal and myenteric plexus.
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